affectors
Class XferInAff

java.lang.Object
  affectors.Affector
      affectors.XferInAff

All Implemented Interfaces:

java.lang.Cloneable

public class XferInAff

extends Affector

This is one half of a pair of Affectors that moves things from one cell to neighboring cells. That is, this is a rough means to have diffusive transport directly from cytoplasm to cytoplasm (e.g. in a syncytium where the "cells" represent unit volumes of cytoplasm rather than real cells. The transfer rate should be the same in both the XferOutAff and XferInAff. Note that all interfaces between adjacent cells are assumed to have the same area and permeability.

Formula
dNODEX/dt = Xfer_NODEX * Sum of NODEX values in all neighbors

Parameters

Target [NODEX]	The Node undergoing difusion.
Transfer rate [Mxfer_NODEX]	The rate at which the Node transfers across the each boundary.

Usage
&NODEX

&XferOutAff NODEX Xfer_NODEX &XferInAff NODEX Xfer_NODEX

&endNODEX/code>

Field Summary

Fields inherited from class affectors.Affector

ADesc, affectorType, CC, CERTIFICATION, CONVERSION, copyNumber, DEGRADATION, FF, firstFreeParam, GG, GUI_CAPABLE, HH, KK, MATHTYPE, NDesc, PDesc, PRODUCTION, RETURNS_DERIV, RETURNS_PARTIALS, TERMTYPE, TT, Type, UNSPECIFIED

Constructor Summary

XferInAff()

Method Summary

void	fixNodes(Cell cell, java.lang.String[] node_names) Overridden because this affector uses the same node in seven places.
float	getValue(Node which_node)
protected void	setLabelsAndTypes()
void	setParameterNumbers(int[] param_nums)

Methods inherited from class affectors.Affector

addDefaultParam, Chi, clearStatic, copy_, copy, doesContainTarget, findOrCreateParam, findParam, getNCValue, getNodes, getNumNodes, getNumParameters, getOtherSide, getParameter, getParameter, getParamName, getParamPos, getParamValue, getParamValue, getParamVariationMode, init, isLinearInTarget, Phi, Psi, setContainsTarget, setDescriptions, setParameter, setParamRange, setParamRange, setParamValue, setParamValue, setSide, setSided

Methods inherited from class java.lang.Object

clone, equals, finalize, getClass, hashCode, notify, notifyAll, toString, wait, wait, wait

Constructor Detail

XferInAff

public XferInAff()

Method Detail

setLabelsAndTypes

protected void setLabelsAndTypes()

Specified by:

setLabelsAndTypes in class Affector

setParameterNumbers

public void setParameterNumbers(int[] param_nums)

Specified by:

setParameterNumbers in class Affector

fixNodes

public void fixNodes(Cell cell,
                     java.lang.String[] node_names)
              throws java.lang.Exception

Overridden because this affector uses the same node in seven places.

Overrides:

fixNodes in class Affector

Throws:

java.lang.Exception

getValue

public float getValue(Node which_node)

Overrides:

getValue in class Affector