affectors
Class TlnAff

java.lang.Object
  affectors.Affector
      affectors.TlnAff

All Implemented Interfaces:

java.lang.Cloneable

public class TlnAff

extends Affector

Translation of an mRNA into protein. Put this affector in the protein, not the mRNA, as it is changing the concentration of the protein. This affector works for both cytoplasmic and membrane proteins. If the protein will be membrane-bound, this affector divides the translation rate by the number of sides that the protein node has so each side gets 1 / num_sides of the total translation. Note that there is no translation rate because this has been "non-dimensionalized" out of the equations.

Formula
dNODEX/dt = nodex

Parameters

Messenger [nodex]	The mRNA Node
Half-life [H_NODEX]	The half-life of the protein Node.

Usage
&NODEX

&TlnAff nodex H_NODEX

&endNODEX

Field Summary

Fields inherited from class affectors.Affector

ADesc, affectorType, CC, CERTIFICATION, CONVERSION, copyNumber, DEGRADATION, FF, firstFreeParam, GG, GUI_CAPABLE, HH, KK, MATHTYPE, NDesc, PDesc, PRODUCTION, RETURNS_DERIV, RETURNS_PARTIALS, TERMTYPE, TT, Type, UNSPECIFIED

Constructor Summary

TlnAff()

Method Summary

float	getValue(Node which_node)
protected void	setLabelsAndTypes()
void	setParameterNumbers(int[] param_nums)

Methods inherited from class affectors.Affector

addDefaultParam, Chi, clearStatic, copy_, copy, doesContainTarget, findOrCreateParam, findParam, fixNodes, getNCValue, getNodes, getNumNodes, getNumParameters, getOtherSide, getParameter, getParameter, getParamName, getParamPos, getParamValue, getParamValue, getParamVariationMode, init, isLinearInTarget, Phi, Psi, setContainsTarget, setDescriptions, setParameter, setParamRange, setParamRange, setParamValue, setParamValue, setSide, setSided

Methods inherited from class java.lang.Object

clone, equals, finalize, getClass, hashCode, notify, notifyAll, toString, wait, wait, wait

Constructor Detail

TlnAff

public TlnAff()

Method Detail

setLabelsAndTypes

protected void setLabelsAndTypes()

Specified by:

setLabelsAndTypes in class Affector

setParameterNumbers

public void setParameterNumbers(int[] param_nums)

Specified by:

setParameterNumbers in class Affector

getValue

public float getValue(Node which_node)

Overrides:

getValue in class Affector