affectors
Class SumAff

java.lang.Object
  affectors.Affector
      affectors.EnhancerRegionAff
          affectors.SumAff

All Implemented Interfaces:

java.lang.Cloneable

public class SumAff

extends EnhancerRegionAff

implements java.lang.Cloneable

This is a special "meta-affector". Rather than calculating something on its own, the SumAff is a container for other affectors. It simply adds together the values of each affector contained within it, with a scaling factor giving the relative weights of each subaffector. Note that for adding transcriptional activators you should use MultiEnhancer.

Formula
dnodex/dt = alpha1 * SubAffector1 + alpha2 * SubAffector2 + ... + alphaN * SubAffectorN

Parameters
There needs to be one alpha parameter per subaffector. The alphas give the relative weights of each subaffectors contribution to the total value.

Usage
&NODEX

&SumAff alpha_aff1 alpha_aff2

&[an affector]
&[another affector]

&endSumAff

&endNODEX

Field Summary

Fields inherited from class affectors.Affector

ADesc, affectorType, CC, CERTIFICATION, CONVERSION, copyNumber, DEGRADATION, FF, firstFreeParam, GG, GUI_CAPABLE, HH, KK, MATHTYPE, NDesc, PDesc, PRODUCTION, RETURNS_DERIV, RETURNS_PARTIALS, TERMTYPE, TT, Type, UNSPECIFIED

Constructor Summary

SumAff()

Method Summary

Affector	copy()
float	getNCValue(Node which_node) Overrides Affector.getNCValue() to multiply together the values from all the subsidiary affectors.
float	getValue(Node which_node) Overrides Affector.getValue() to multiply together the values from all the subsidiary affectors.
protected void	setLabelsAndTypes() half life param
void	setParameterNumbers(int[] param_nums)

Methods inherited from class affectors.EnhancerRegionAff

addAffector, getNodes, getSubaffector, setSide

Methods inherited from class affectors.Affector

addDefaultParam, Chi, clearStatic, copy_, doesContainTarget, findOrCreateParam, findParam, fixNodes, getNumNodes, getNumParameters, getOtherSide, getParameter, getParameter, getParamName, getParamPos, getParamValue, getParamValue, getParamVariationMode, init, isLinearInTarget, Phi, Psi, setContainsTarget, setDescriptions, setParameter, setParamRange, setParamRange, setParamValue, setParamValue, setSided

Methods inherited from class java.lang.Object

clone, equals, finalize, getClass, hashCode, notify, notifyAll, toString, wait, wait, wait

Constructor Detail

SumAff

public SumAff()

Method Detail

setLabelsAndTypes

protected void setLabelsAndTypes()

Description copied from class: EnhancerRegionAff

half life param

Overrides:

setLabelsAndTypes in class EnhancerRegionAff

setParameterNumbers

public void setParameterNumbers(int[] param_nums)

Overrides:

setParameterNumbers in class EnhancerRegionAff

getValue

public float getValue(Node which_node)

Overrides Affector.getValue() to multiply together the values from all the subsidiary affectors.

Overrides:

getValue in class EnhancerRegionAff

getNCValue

public float getNCValue(Node which_node)

Overrides Affector.getNCValue() to multiply together the values from all the subsidiary affectors.

Overrides:

getNCValue in class EnhancerRegionAff

copy

public Affector copy()

Overrides:

copy in class EnhancerRegionAff