affectors
Class RecycleBAff

java.lang.Object
  affectors.Affector
      affectors.RecycleBAff

All Implemented Interfaces:

java.lang.Cloneable

public class RecycleBAff

extends Affector

The other half of a pair of affectors which recycles proteins from one state back to another. Use this one in the recycled state. Use the A version in the pre-recycled state. The two versions are just negations of each other. This can be used for both cytoplasmic and membrane-bound proteins. DOES NOT substitute for the Dissociation_Aff pair unless you don't care about the ligand.

Formula
dNODEX_Recycled/dt = NODEX / H_NODEX

Parameters

Recyclee [NODEX]	The Node that is going to be recycled back to this Node.
Half-life [H_NODEX]	The time it takes for half of the recyclee node to be recycled.

Usage
&NODEX_Recycled

&RecycleBAff NODEX H_NODEX

&endNODEX_Recycled/code>

Field Summary

Fields inherited from class affectors.Affector

ADesc, affectorType, CC, CERTIFICATION, CONVERSION, copyNumber, DEGRADATION, FF, firstFreeParam, GG, GUI_CAPABLE, HH, KK, MATHTYPE, NDesc, PDesc, PRODUCTION, RETURNS_DERIV, RETURNS_PARTIALS, TERMTYPE, TT, Type, UNSPECIFIED

Constructor Summary

RecycleBAff()

Method Summary

float	getValue(Node which_node)
protected void	setLabelsAndTypes()
void	setParameterNumbers(int[] param_nums)

Methods inherited from class affectors.Affector

addDefaultParam, Chi, clearStatic, copy_, copy, doesContainTarget, findOrCreateParam, findParam, fixNodes, getNCValue, getNodes, getNumNodes, getNumParameters, getOtherSide, getParameter, getParameter, getParamName, getParamPos, getParamValue, getParamValue, getParamVariationMode, init, isLinearInTarget, Phi, Psi, setContainsTarget, setDescriptions, setParameter, setParamRange, setParamRange, setParamValue, setParamValue, setSide, setSided

Methods inherited from class java.lang.Object

clone, equals, finalize, getClass, hashCode, notify, notifyAll, toString, wait, wait, wait

Constructor Detail

RecycleBAff

public RecycleBAff()

Method Detail

setLabelsAndTypes

protected void setLabelsAndTypes()

Specified by:

setLabelsAndTypes in class Affector

setParameterNumbers

public void setParameterNumbers(int[] param_nums)

Specified by:

setParameterNumbers in class Affector

getValue

public float getValue(Node which_node)

Overrides:

getValue in class Affector