affectors
Class RecycleAAff

java.lang.Object
  affectors.Affector
      affectors.RecycleAAff

All Implemented Interfaces:

java.lang.Cloneable

public class RecycleAAff

extends Affector

One half of a pair of affectors which recycles proteins from one state back to another. Use this one in the pre-recycled state. Use the B version in the recycled state. The recycling occurs at some fixed rate. This can be used for both cytoplasmic and membrane-bound proteins. DOES NOT substitute for the Dissociation_Aff pair unless you don't care about the ligand.

Formula
dNODEX/dt = -NODEX / H_NODEX

Parameters

Recyclee [NODEX]	The Node that is going to be recycled back to another Node.
Half-life [H_NODEX]	The time it takes for half of the recyclee node to be recycled.

Usage
&NODEX

&RecycleAAff NODEX H_NODEX

&endNODEX/code>

Field Summary

Fields inherited from class affectors.Affector

ADesc, affectorType, CC, CERTIFICATION, CONVERSION, copyNumber, DEGRADATION, FF, firstFreeParam, GG, GUI_CAPABLE, HH, KK, MATHTYPE, NDesc, PDesc, PRODUCTION, RETURNS_DERIV, RETURNS_PARTIALS, TERMTYPE, TT, Type, UNSPECIFIED

Constructor Summary

RecycleAAff()

Method Summary

float	getNCValue(Node which_node)
float	getValue(Node which_node)
protected void	setLabelsAndTypes()
void	setParameterNumbers(int[] param_nums)

Methods inherited from class affectors.Affector

addDefaultParam, Chi, clearStatic, copy_, copy, doesContainTarget, findOrCreateParam, findParam, fixNodes, getNodes, getNumNodes, getNumParameters, getOtherSide, getParameter, getParameter, getParamName, getParamPos, getParamValue, getParamValue, getParamVariationMode, init, isLinearInTarget, Phi, Psi, setContainsTarget, setDescriptions, setParameter, setParamRange, setParamRange, setParamValue, setParamValue, setSide, setSided

Methods inherited from class java.lang.Object

clone, equals, finalize, getClass, hashCode, notify, notifyAll, toString, wait, wait, wait

Constructor Detail

RecycleAAff

public RecycleAAff()

Method Detail

setLabelsAndTypes

protected void setLabelsAndTypes()

Specified by:

setLabelsAndTypes in class Affector

setParameterNumbers

public void setParameterNumbers(int[] param_nums)

Specified by:

setParameterNumbers in class Affector

getValue

public float getValue(Node which_node)

Overrides:

getValue in class Affector

getNCValue

public float getNCValue(Node which_node)

Overrides:

getNCValue in class Affector