affectors
Class DissociationCytoMemA_Aff

java.lang.Object
  affectors.Affector
      affectors.DissociationCytoMemA_Aff

All Implemented Interfaces:

java.lang.Cloneable

public class DissociationCytoMemA_Aff

extends Affector

One third of a triplet of affectors which mediates dissociation of protein complexes where one of the ligands is cytoplasmic and the other is membrane-bound. Use this one in the dimerized state. Use the B version in the recycled membrane-bound RECEPTOR and the C version in the cytoplasmic LIGAND. Note that the equation here is exactly the same as the Decay affector. This can be used for both cytoplasmic and membrane-bound proteins. As with the heterodimerization Affectors, the ligand and receptor must be scaled by the ratio between their dimensional maximum quantities, and that scaling happens in here only for the ligand (the complex is assumed to be on the same scale as the receptor).

Formula
dNODEX/dt = -NODEX / H_NODEX

Parameters

Complex [NODEX]	The Node represeting the dimer
Half-life [H_NODEX]	The half-life of the complex before it splits apart.

Usage
&NODEX

&DissociationA_Aff NODEX H_NODEX

&endNODEX

See Also:

DissociationB_Aff, DissociationC_Aff

Field Summary

Fields inherited from class affectors.Affector

ADesc, affectorType, CC, CERTIFICATION, CONVERSION, copyNumber, DEGRADATION, FF, firstFreeParam, GG, GUI_CAPABLE, HH, KK, MATHTYPE, NDesc, PDesc, PRODUCTION, RETURNS_DERIV, RETURNS_PARTIALS, TERMTYPE, TT, Type, UNSPECIFIED

Constructor Summary

DissociationCytoMemA_Aff()

Method Summary

float	getNCValue(Node which_node)
float	getValue(Node which_node)
protected void	setLabelsAndTypes()
void	setParameterNumbers(int[] param_nums)

Methods inherited from class affectors.Affector

addDefaultParam, Chi, clearStatic, copy_, copy, doesContainTarget, findOrCreateParam, findParam, fixNodes, getNodes, getNumNodes, getNumParameters, getOtherSide, getParameter, getParameter, getParamName, getParamPos, getParamValue, getParamValue, getParamVariationMode, init, isLinearInTarget, Phi, Psi, setContainsTarget, setDescriptions, setParameter, setParamRange, setParamRange, setParamValue, setParamValue, setSide, setSided

Methods inherited from class java.lang.Object

clone, equals, finalize, getClass, hashCode, notify, notifyAll, toString, wait, wait, wait

Constructor Detail

DissociationCytoMemA_Aff

public DissociationCytoMemA_Aff()

Method Detail

setLabelsAndTypes

protected void setLabelsAndTypes()

Specified by:

setLabelsAndTypes in class Affector

setParameterNumbers

public void setParameterNumbers(int[] param_nums)

Specified by:

setParameterNumbers in class Affector

getValue

public float getValue(Node which_node)

Overrides:

getValue in class Affector

getNCValue

public float getNCValue(Node which_node)

Overrides:

getNCValue in class Affector