affectors
Class DissociationC_Aff

java.lang.Object
  affectors.Affector
      affectors.DissociationC_Aff

All Implemented Interfaces:

java.lang.Cloneable

public class DissociationC_Aff

extends Affector

One third of a triplet of affectors which mediates dissociation of protein complexes. Use this one in the LIGAND. Use the A version in the ligand-bound state and the B version in the recycled RECEPTOR. They reverse the heterodimerization affectors. Note that the equation here is exactly the same as the Decay affector. This can be used for both cytoplasmic and membrane-bound proteins. As with the heterodimerization Affectors, the ligand and receptor must be scaled by the ratio between their dimensional maximum quantities, and that scaling happens in here only for the ligand (the complex is assumed to be on the same scale as the receptor).

Formula
dNODEX/dt = (receptorScale / ligandScale) * NODEX / H_NODEX

Parameters

Complex [NODEX]	The Node represeting the dimer
Half-life [H_NODEX]	The half-life of the complex before it splits apart.
Max ligand [max_LIGAND]	The maximum dimensional amount of ligand relative to the receptors max.
Max receptor [max_RECEPT]	The maximum dimensional amount of receptor relative to the ligands max.

Usage
&NODEX

&DissociationB_Aff NODEX H_NODEX max_LIGAND max_RECEPTOR

&endNODEX

See Also:

DissociationA_Aff, DissociationB_Aff

Field Summary

Fields inherited from class affectors.Affector

ADesc, affectorType, CC, CERTIFICATION, CONVERSION, copyNumber, DEGRADATION, FF, firstFreeParam, GG, GUI_CAPABLE, HH, KK, MATHTYPE, NDesc, PDesc, PRODUCTION, RETURNS_DERIV, RETURNS_PARTIALS, TERMTYPE, TT, Type, UNSPECIFIED

Constructor Summary

DissociationC_Aff()

Method Summary

float	getValue(Node which_node)
protected void	setLabelsAndTypes()
void	setParameterNumbers(int[] param_nums)

Methods inherited from class affectors.Affector

addDefaultParam, Chi, clearStatic, copy_, copy, doesContainTarget, findOrCreateParam, findParam, fixNodes, getNCValue, getNodes, getNumNodes, getNumParameters, getOtherSide, getParameter, getParameter, getParamName, getParamPos, getParamValue, getParamValue, getParamVariationMode, init, isLinearInTarget, Phi, Psi, setContainsTarget, setDescriptions, setParameter, setParamRange, setParamRange, setParamValue, setParamValue, setSide, setSided

Methods inherited from class java.lang.Object

clone, equals, finalize, getClass, hashCode, notify, notifyAll, toString, wait, wait, wait

Constructor Detail

DissociationC_Aff

public DissociationC_Aff()

Method Detail

setLabelsAndTypes

protected void setLabelsAndTypes()

Specified by:

setLabelsAndTypes in class Affector

setParameterNumbers

public void setParameterNumbers(int[] param_nums)

Specified by:

setParameterNumbers in class Affector

getValue

public float getValue(Node which_node)

Overrides:

getValue in class Affector