affectors
Class CleaveA_Aff

java.lang.Object
  affectors.Affector
      affectors.CleaveA_Aff

All Implemented Interfaces:

java.lang.Cloneable

public class CleaveA_Aff

extends Affector

This is one half of an affector that cleaves a single cytoplasmic node into two other cytoplasmic nodes. The rate of cleavage is not regulated by any other species and follow simple enzymne kinetics. Use this affector in the dimer. Use CleaveB_Aff in each of the product species.

Formula
dDIMER/dt = -k_cleaveage * DIMER

Parameters

Dimer [DIMER]	The dimer being cleaved
Kappa [k_cleaveage]	The rate for cleveage

Usage
&DIMER

&CleaveA_Aff DIMER k_cleveage

&endDIMER

See Also:

CleaveB_Aff

Field Summary

Fields inherited from class affectors.Affector

ADesc, affectorType, CC, CERTIFICATION, CONVERSION, copyNumber, DEGRADATION, FF, firstFreeParam, GG, GUI_CAPABLE, HH, KK, MATHTYPE, NDesc, PDesc, PRODUCTION, RETURNS_DERIV, RETURNS_PARTIALS, TERMTYPE, TT, Type, UNSPECIFIED

Constructor Summary

CleaveA_Aff()

Method Summary

float	getNCValue(Node which_node)
float	getValue(Node which_node)
protected void	setLabelsAndTypes()
void	setParameterNumbers(int[] param_nums)

Methods inherited from class affectors.Affector

addDefaultParam, Chi, clearStatic, copy_, copy, doesContainTarget, findOrCreateParam, findParam, fixNodes, getNodes, getNumNodes, getNumParameters, getOtherSide, getParameter, getParameter, getParamName, getParamPos, getParamValue, getParamValue, getParamVariationMode, init, isLinearInTarget, Phi, Psi, setContainsTarget, setDescriptions, setParameter, setParamRange, setParamRange, setParamValue, setParamValue, setSide, setSided

Methods inherited from class java.lang.Object

clone, equals, finalize, getClass, hashCode, notify, notifyAll, toString, wait, wait, wait

Constructor Detail

CleaveA_Aff

public CleaveA_Aff()

Method Detail

setLabelsAndTypes

protected void setLabelsAndTypes()

Specified by:

setLabelsAndTypes in class Affector

setParameterNumbers

public void setParameterNumbers(int[] param_nums)

Specified by:

setParameterNumbers in class Affector

getValue

public float getValue(Node which_node)

Overrides:

getValue in class Affector

getNCValue

public float getNCValue(Node which_node)

Overrides:

getNCValue in class Affector