stoppers
Class NeuroNoiseStop

java.lang.Object
  stoppers.SimpleStop
      stoppers.NeuroNoiseStop

public class NeuroNoiseStop

extends SimpleStop

Specially made stopping class for exploring switching behavior in the neurogenic network. The idea behind this stopper is that the AC/SC switch ought to through two neighboring cells in opposite directions, assuming they start at different concentrations. So the second and third cell in the second row are assumed to be a lower and higher init concentration cell respectively. Then the stopper looks to see if the higher cell ends up above the high threshold and the lower cell ends below the low threshold. Also, since this should occur because of the switching and not just because they started on either side of some threshold, the fifth cell in the row is assumed to start at the low init concentration and the whole thing is only a success if cell 2 = low, cell 3 = high, cell 5 = high.

Constructor Summary

NeuroNoiseStop()

NeuroNoiseStop(float stop_time)

Method Summary

boolean	didPass()
boolean	didPass(float s)
void	init(Model model)
protected void	loadParameter(java.lang.String info, BetterTokenizer tokenizer)
void	reset()
void	saveOutput(java.io.PrintWriter ps, java.lang.String inset) This function is called to save information to a cam file.
void	saveOutputTags(java.io.PrintWriter ps, java.lang.String inset) This function is called when a cam file is being set up.
boolean	stop(float time)

Methods inherited from class stoppers.SimpleStop

computeStripeScore, getHowStable, getScore, getStopTime, initCells, loadParameters, setCutoff, setEvaluating, setStopTime

Methods inherited from class java.lang.Object

clone, equals, finalize, getClass, hashCode, notify, notifyAll, toString, wait, wait, wait

Constructor Detail

NeuroNoiseStop

public NeuroNoiseStop()

NeuroNoiseStop

public NeuroNoiseStop(float stop_time)

Method Detail

init

public void init(Model model)

Overrides:

init in class SimpleStop

stop

public boolean stop(float time)

Overrides:

stop in class SimpleStop

didPass

public boolean didPass(float s)

Overrides:

didPass in class SimpleStop

didPass

public boolean didPass()

Overrides:

didPass in class SimpleStop

reset

public void reset()

Overrides:

reset in class SimpleStop

saveOutputTags

public void saveOutputTags(java.io.PrintWriter ps,
                           java.lang.String inset)

Description copied from class: SimpleStop

This function is called when a cam file is being set up. See ModelIterator for more information.

Overrides:

saveOutputTags in class SimpleStop

saveOutput

public void saveOutput(java.io.PrintWriter ps,
                       java.lang.String inset)

Description copied from class: SimpleStop

This function is called to save information to a cam file. See ModelIterator for more information.

Overrides:

saveOutput in class SimpleStop

loadParameter

protected void loadParameter(java.lang.String info,
                             BetterTokenizer tokenizer)
                      throws java.lang.Exception

Overrides:

loadParameter in class SimpleStop

Throws:

java.lang.Exception