stoppers
Class FindMaxRatioStop

java.lang.Object
  stoppers.SimpleStop
      stoppers.FindMaxRatioStop

public class FindMaxRatioStop

extends SimpleStop

A stopper that measures the maximum ratio between a node's concentration in two different cells over some time. To avoid large ratio's simply do to very small concentrations, the ratio is calculated as (C(1) + epsilon) / (C(2) + epsilon) where epsilon is some small value.

Constructor Summary

FindMaxRatioStop()

FindMaxRatioStop(float stop_time)

Method Summary

boolean	didPass()
boolean	didPass(float s)
protected void	loadParameter(java.lang.String info, BetterTokenizer tokenizer)
boolean	stop(float time)

Methods inherited from class stoppers.SimpleStop

computeStripeScore, getHowStable, getScore, getStopTime, init, initCells, loadParameters, reset, saveOutput, saveOutputTags, setCutoff, setEvaluating, setStopTime

Methods inherited from class java.lang.Object

clone, equals, finalize, getClass, hashCode, notify, notifyAll, toString, wait, wait, wait

Constructor Detail

FindMaxRatioStop

public FindMaxRatioStop()

FindMaxRatioStop

public FindMaxRatioStop(float stop_time)

Method Detail

stop

public boolean stop(float time)

Overrides:

stop in class SimpleStop

didPass

public boolean didPass(float s)

Overrides:

didPass in class SimpleStop

didPass

public boolean didPass()

Overrides:

didPass in class SimpleStop

loadParameter

protected void loadParameter(java.lang.String info,
                             BetterTokenizer tokenizer)
                      throws java.lang.Exception

Overrides:

loadParameter in class SimpleStop

Throws:

java.lang.Exception