Serialized Form
TheMainGui
MainGui TheMainGui
- The MainGui object that this belongs to
TheTemplate
AffectorTemplate TheTemplate
- The AFfector Template
AttachedNodeStateViewer
NodeStateViewer AttachedNodeStateViewer
- A pointer to the attached NodeStateViewer if there is one
CellShapeArray
java.awt.Polygon[] CellShapeArray
- Stores the cell shapes including scale and translation - speeds up painting
CellShapeArrayBase
java.awt.Polygon[] CellShapeArrayBase
- Stores the base cell shapes and locations
ExpMultiplier
float ExpMultiplier
- Multiplier used for exp color maping
GraphMode
int GraphMode
- Sets the type of graph being displayed
GraphFunction
int GraphFunction
- Specifies what transformation function should be applied to the graph color
LogMultiplier
float LogMultiplier
- Multiplier used for log color maping
MainMenu
javax.swing.JMenuBar MainMenu
- The Main JMenuBar
MainPanel
javax.swing.JPanel MainPanel
- The main panel
OptionsPanel
genegui.CellSurfaceViewer.CellViewOptionsPanel OptionsPanel
- The unique instance of the optionspanel
PaintPanels
java.util.ArrayList PaintPanels
- An array list of all the SingleNodeNodeViewerPaintPaenls
RefreshReject
float RefreshReject
- Controls the rate at which the display refreshes by rejecting changes in size below the RefreshReject
SaveThis
CellSurfaceViewer SaveThis
- Self Reference
Scale
double Scale
- The scale at which to draw the cell shape objects
SimpleDisplay
boolean SimpleDisplay
- If set to true, simple display mode is used which just shows values
SingleNodeViewerPanelDimension
java.awt.Dimension SingleNodeViewerPanelDimension
- Preferred dimension for the SingleNodeViewerPanels
TheMainGui
MainGui TheMainGui
- The MainGui object that this belongs to
TheModel
Model TheModel
- A pointer to the Model being displayed
TheModelState
ModelState TheModelState
- A pointer to the ModelState used to pass information to the CellViewer
TheNetwork
Network TheNetwork
- A pointer to the network found in each cell
ThresholdValue
float ThresholdValue
- The threshold value used by the threshold colormap
Translation
java.awt.Point Translation
- Translation for drawing of cells
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Class genegui.CellSurfaceViewer.CellViewerExpControl.ExpGraphPanel extends javax.swing.JPanel implements Serializable |
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Class genegui.CellSurfaceViewer.CellViewerLogControl.LogGraphPanel extends javax.swing.JPanel implements Serializable |
IteratorFile
java.lang.String IteratorFile
LastOpenedDir
java.lang.String LastOpenedDir
LastSavedDir
java.lang.String LastSavedDir
ModelFile
java.lang.String ModelFile
StartDir
java.lang.String StartDir
MainPanel
javax.swing.JPanel MainPanel
- The content pane
TheTextPane
javax.swing.JTextPane TheTextPane
- The JTextPane used to edit the file
BackButton
javax.swing.JButton BackButton
- Button for navigating back through list of visited links
EditorPane
javax.swing.JEditorPane EditorPane
- The EditorPane for storing
ForwardButton
javax.swing.JButton ForwardButton
- Button for navigating forward through list of visited links
MainPane
javax.swing.JPanel MainPane
- The main pane holds all
VisitedLinkIndex
int VisitedLinkIndex
- The current link in the visited links list
VisitedLinkList
java.util.Vector VisitedLinkList
- the list of visited links
AccumulatedRunTime
long AccumulatedRunTime
- Keep track of accumulated run time
AccumulateResults
javax.swing.JCheckBox AccumulateResults
- Accumulates results in SuccessList when checked
AccumulatedViewers
java.util.Vector AccumulatedViewers
- A list of viewers accumulated by this iterator
AttachedCellSurfaceViewer
CellSurfaceViewer AttachedCellSurfaceViewer
- Attached CellSurfaceViewer or null
AttachedNodeStateViewer
NodeStateViewer AttachedNodeStateViewer
- Attached NodeStateViewer or null
AttachedParameterViewer
ParameterViewer AttachedParameterViewer
- Attached ParameterViewer or null
AttachedCamGraph
mygraphs.CamGraph2 AttachedCamGraph
- Attached CamGraph or null
ChooseButton
javax.swing.JButton ChooseButton
- Button for invoking file chooser
DisableSuccessJList
boolean DisableSuccessJList
LastViewerLocation
java.awt.Point LastViewerLocation
- The last location a spawned viewer was put at
LastViewerHeight
int LastViewerHeight
- The width of the last spawned viewer
LastViewerWidth
int LastViewerWidth
- The height of the last spawned viewer
MainMenu
javax.swing.JMenuBar MainMenu
- Main menubar
MainPanel
javax.swing.JPanel MainPanel
- The JPanel for holding all things great and small
MessageBox
javax.swing.JTextArea MessageBox
- Box for delivering messages from the iterator
OutputFileField
javax.swing.JTextField OutputFileField
- JTextField for showing/changing output file
OverlapViewers
javax.swing.JRadioButton OverlapViewers
- Button causes spawned viewers to be overlapped
PackViewers
javax.swing.JRadioButton PackViewers
- Button causes spawned viewers to be packed side by side
PassedField
javax.swing.JTextField PassedField
- JTextField for displaying number of runs that have passed
RateField
javax.swing.JTextField RateField
- JTextField for displaying percentage of passed runs
ResetButton
javax.swing.JButton ResetButton
- Resets the iterator
RunButton
javax.swing.JToggleButton RunButton
- Starts the iterator a runin'
RunsField
javax.swing.JTextField RunsField
- JTextField for displaying number of runs
RunStartTime
long RunStartTime
- The time an iterator run started
RunTimeField
javax.swing.JTextField RunTimeField
- JTextField for displaying the iterator run time
RunTimer
javax.swing.Timer RunTimer
- Timer used for periodic interrupts to re-display run time
SaveThis
javax.swing.JInternalFrame SaveThis
- Self reference
ShowCellViewers
javax.swing.JCheckBox ShowCellViewers
- Shows successfull results in CellViewers when checked
ShowNodeViewers
javax.swing.JCheckBox ShowNodeViewers
- Shows successfull results in NodeViewers when checked
ShowParameterViewers
javax.swing.JCheckBox ShowParameterViewers
- Shows successfull results in ParameterViewers when checked
StepButton
javax.swing.JButton StepButton
- Button causes a single iterator step
StopButton
javax.swing.JToggleButton StopButton
- Button stop the iterator run
SuccessJList
javax.swing.JList SuccessJList
- JList for showing and selecting element of TheSuccessList
TheMainGUI
MainGui TheMainGUI
- Pointer to the GeneNet
TheModelIterator
ModelIterator TheModelIterator
- Pointer to the ModelIterator
TheSuccessList
SuccessList TheSuccessList
- List of successful runs
EditMenu
javax.swing.JMenu EditMenu
- Edit menu bar
FileMenu
javax.swing.JMenu FileMenu
- File menu bar
GUIListeners
java.util.Vector GUIListeners
- A List of GUIListeners
HelpMenu
javax.swing.JMenu HelpMenu
- Help menu bar
LastTime
float LastTime
- Last time display value used to squelch excess painting on Macs
MainMenu
javax.swing.JMenuBar MainMenu
- Main menubar
MainPanel
javax.swing.JDesktopPane MainPanel
- The desktop pane for holding all frames
ModelFile
java.io.File ModelFile
- The file handle for the model/network loaded through this GUI
OSXConsole
java.lang.Process OSXConsole
- The OSX console process
ResetButton
javax.swing.JToggleButton ResetButton
- Toolbar button for resting the model
RunButton
javax.swing.JToggleButton RunButton
- Toolbar button for starting single model runs
RunMenu
javax.swing.JMenu RunMenu
- The run menubar
SaveThis
MainGui SaveThis
- Self reference
StepButton
javax.swing.JToggleButton StepButton
- Toolbar button for stepping through the model
TheConsole
Console TheConsole
- Console object that standard output is re-directed to
TheErrorConsole
Console TheErrorConsole
- Console object that errors are re-directed to
TheConfiguration
Configuration TheConfiguration
- The User COnfiguration object
TheGeneNet
GeneNet TheGeneNet
- The GeneNet object that this GUI communicates with
TheHelpWindow
HTMLViewer TheHelpWindow
- The unique help window
TheModel
Model TheModel
- A copy of the model that must be updated whenever a new network is loaded
TimeField
javax.swing.JLabel TimeField
- Field for displaying time step and other information
TimeLabelButton
javax.swing.JToggleButton TimeLabelButton
- Time label is also a button for disabling the time display
TopPanel
javax.swing.JPanel TopPanel
- Holds MainPanel and JToolBar
ViewMenu
javax.swing.JMenu ViewMenu
- The viewer menu
SaveThis
ModelStateEditor SaveThis
- Self Referencce
TheDeskTop
javax.swing.JDesktopPane TheDeskTop
- The Desktop used to manage all object in the Editor
TheMainGui
MainGui TheMainGui
- The MainGui object that this belongs to
TheModelState
ModelState TheModelState
- The ModelState being edited
TheToolBox
ModelStateToolBox TheToolBox
- The toolbox with neat function for modifying ModelViews
MainPanel
javax.swing.JPanel MainPanel
- The MainPanel holds all
NodePanels
genegui.ModelStateNodePalette.NodePanel[] NodePanels
- An array of NodePanels, one for each Node type in the model
ScrollPane
javax.swing.JScrollPane ScrollPane
- A ScrollPane for scrolling through to-large a list of NodePanels
SliderDeathTimer
javax.swing.Timer SliderDeathTimer
- Timer for killing the popup slider windows in case the user doesn't touch them
SliderWindow
javax.swing.JWindow SliderWindow
- A JWindow for holding a popup slider. It is a class variable so we can
make sure we allow only one to be open at a time.
TheMainGui
MainGui TheMainGui
- The Main GUI
TheModelState
ModelState TheModelState
- The ModelState that this ModelStateNodePalette is attached to
Mode
int Mode
- The mode (which tool is selected)
ButtonSelect
javax.swing.JToggleButton ButtonSelect
- The Select tool toggle button
ButtonMarquee
javax.swing.JToggleButton ButtonMarquee
- The Marquee tool toggle button
ButtonApply
javax.swing.JToggleButton ButtonApply
- The Apply tool toggle button
ButtonGradient
javax.swing.JToggleButton ButtonGradient
- The Gradient tool toggle button
ButtonStripe
javax.swing.JToggleButton ButtonStripe
- The Stripe tool toggle button
ButtonMagnify
javax.swing.JToggleButton ButtonMagnify
- The Magnify tool toggle button
DragOffset
java.awt.Point DragOffset
- The difference between the mouse pointer and UL of the control area for
window drag operations
CellColorArray
java.awt.Color[] CellColorArray
- Current paint color of cells allows for more rapid repaint operations
CellSelectionArray
boolean[] CellSelectionArray
- Cells which are selected
CellShapeArray
java.awt.Polygon[] CellShapeArray
- Stores the cell shapes including scale and translation - speeds up painting
CellShapeArrayBase
java.awt.Polygon[] CellShapeArrayBase
- Stores the base cell shapes and locations
ControlArea
javax.swing.JPanel ControlArea
- Area at the top for displaying control buttons and drag bar. Also shows
which ModelStateView is selected
DragOffset
java.awt.Point DragOffset
- Drag offset used for drag operations. Distance from mouse pointer and UL of window
LastSelectedCell
int LastSelectedCell
- The last cell that was selected. Used for copying cell properties.
NodeSelectionArray
boolean[] NodeSelectionArray
- The nodes that are visible for this viewer
SaveThis
ModelStateView SaveThis
- Copy of this
Scale
double Scale
- The scale at which to draw the cell shape objects
TheMainGui
MainGui TheMainGui
- The MainGui object that this belongs to
TheModelState
ModelState TheModelState
- The ModelState that this viewer is attached to
TheModelStateEditor
ModelStateEditor TheModelStateEditor
- A pointer to the parent ModelStateEditor
TheModelStateViewPane
genegui.ModelStateView.ModelStateViewPane TheModelStateViewPane
- The pannel used to display the cells themselves
Translation
java.awt.Point Translation
- Translation for drawing of cells
AffectorColor
java.awt.Color AffectorColor
- Default color for drawing an Affector
AffectorDisplays
NetworkPaintPanel.AffectorDisplay[] AffectorDisplays
- An array of all affector displays. Index same as AffectorTemplates index
AffectorDisplaysHashtable
java.util.Hashtable AffectorDisplaysHashtable
- A hash for associating AffectorAttemplates and AffectorDisplays
AffectorSelectedColor
java.awt.Color AffectorSelectedColor
- The color for a selected affector
ArrowHead
java.awt.Polygon ArrowHead
- Polygon for storing the arrowhead shape used for drawing paths to nodes
DefaultDiagramDimension
java.awt.Dimension DefaultDiagramDimension
- The default width for the network diagram node layout (affectors may be further out)
DefaultDiagramOffset
java.awt.Point DefaultDiagramOffset
- The default offset (center) for the diagram node layout
DiagramCenter
java.awt.Point DiagramCenter
- The calculated center of all the nodes on the diagram
ExpMultiplier
float ExpMultiplier
- Multiplier used for exp color maping
LineIncomingColor
java.awt.Color LineIncomingColor
- Default color for lines drawn from affectors to nodes
LineSelectedIncomingColor
java.awt.Color LineSelectedIncomingColor
- The color for lines drawn into a node when the node is selected
LineOutgoingColor
java.awt.Color LineOutgoingColor
- Default color for paths drwan from nodes to affectors
LineSelectedOutgoingColor
java.awt.Color LineSelectedOutgoingColor
- The color for lines drawn from nodes to affectors when the node is selected
LogMultiplier
float LogMultiplier
- Multiplier used for log color maping
GraphFunction
int GraphFunction
- Specifies what transformation function should be applied to the graph color
NodeDisplays
NetworkPaintPanel.NodeDisplay[] NodeDisplays
- An array of all NodeDisplays
NodeBorderColor
java.awt.Color NodeBorderColor
- The color of node borders
NodeDisplaysHashtable
java.util.Hashtable NodeDisplaysHashtable
- A hash for associating NodeTemplates and NodeDIsplays
NodeSelectedColor
java.awt.Color NodeSelectedColor
- The fill color for painting a selected node
NodeTemplates
NodeTemplate[] NodeTemplates
- An array of all the NodeTemplates
Parent
NetworkViewer2 Parent
- The Viewer/Editor holding this panel
PaintInsets
java.awt.Insets PaintInsets
- The insets around the painted network
SaveThis
javax.swing.JPanel SaveThis
- Self reference
SelectedAffector
NetworkPaintPanel.AffectorDisplay SelectedAffector
- The selected Affector display
SelectedCellState
CellState SelectedCellState
- The CellState for the selected cell in active display mode
SelectedNode
NetworkPaintPanel.NodeDisplay SelectedNode
- The selected NodeDisplay
TheNetwork
Network TheNetwork
- A pointer to the Network
ThresholdValue
float ThresholdValue
- The threshold value used by the threshold colormap
DragOffset
java.awt.Point DragOffset
- Drag offset used for drag operations. Distance from mouse pointer and UL of window
Height
int Height
- Height of image
Moveable
boolean Moveable
- Set to true is user can drag the display
Radius
int Radius
- Radius for circle used to render many types
TheAffector
Affector TheAffector
- The affector that this is a display for
TheNodeDisplay
NetworkPaintPanel.NodeDisplay TheNodeDisplay
- The NodeDisplay that this AffectorDisplay is related to
TheTemplate
AffectorTemplate TheTemplate
- The Affector template
ThisDisplay
NetworkPaintPanel.AffectorDisplay ThisDisplay
- Self reference
Width
int Width
- Width of image
AffectorDisplays
java.util.Vector AffectorDisplays
- A vector of associated AffectorDisplays to allow for faster repaints
DragOffset
java.awt.Point DragOffset
- Drag offset used for drag operations. Distance from mouse pointer and UL of window
Height
float Height
- Height of image
LastPaintedValue
float LastPaintedValue
Name
java.lang.String Name
- Node Name
NodeShape
java.awt.Shape NodeShape
- The shape of the node set according to its type
OffScreenImage
java.awt.Image OffScreenImage
Redrawing
boolean Redrawing
- True if the node is being redrawn in the offScreenBuffer
TextLocation
java.awt.Point TextLocation
- Location of Text, relative to 0,0 point
TheNodeTemplate
NodeTemplate TheNodeTemplate
- The node template
ThisDisplay
NetworkPaintPanel.NodeDisplay ThisDisplay
- Self reference
Type
int Type
- The type of node
Width
float Width
- Width of image
ActiveDisplayMode
boolean ActiveDisplayMode
- When set to true, displays node values for selected cell
AutoResizeItem
javax.swing.JMenuItem AutoResizeItem
AutoResizePaintPanel
boolean AutoResizePaintPanel
CellIndex
int CellIndex
CellSelector
SingleCellSelector CellSelector
ExpMultiplier
float ExpMultiplier
- Multiplier used for exp color maping
GraphFunction
int GraphFunction
- Specifies what transformation function should be applied to the graph color
LastViewer
GuiInterface LastViewer
LogMultiplier
float LogMultiplier
- Multiplier used for log color maping
MainMenu
javax.swing.JMenuBar MainMenu
RefreshReject
float RefreshReject
- Controls the rate at which the display refreshes by rejecting changes in size below the RefreshReject
RightsidePanel
javax.swing.JPanel RightsidePanel
- The right-side panel for holding Node/Affector viewers
SaveThis
NetworkViewer2 SaveThis
- Self reference
SplitPanel
javax.swing.JSplitPane SplitPanel
- MainPanel for storing everything
TheMainGui
MainGui TheMainGui
- The MainGui object that this belongs to
TheModel
Model TheModel
- Pointer to the current model
TheModelState
ModelState TheModelState
- A pointer to the ModelState used to pass information to the CellViewer
ThePaintPanel
NetworkPaintPanel ThePaintPanel
- The NetworkPaint panel that holds the display objects and paints the connections
ThresholdValue
float ThresholdValue
- The threshold value used by the threshold colormap
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Class genegui.NetworkViewer2.CellViewerExpControl.ExpGraphPanel extends javax.swing.JPanel implements Serializable |
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Class genegui.NetworkViewer2.CellViewerLogControl.LogGraphPanel extends javax.swing.JPanel implements Serializable |
CellIndex
int CellIndex
- The Index of the cell presently being viewed
TheCellPaintPanel
genegui.NodeStateViewer.CellPaintPanel TheCellPaintPanel
- The panel the cell outlines are painted onto
CellPaintPanelDimension
java.awt.Dimension CellPaintPanelDimension
- Preferred dimension for the CellPaintPanel
CellShapeArray
java.awt.Polygon[] CellShapeArray
- Stores the base cell shapes and locations
MainPanel
javax.swing.JPanel MainPanel
- The Main panel that stores all
NodePanels
genegui.NodeStateViewer.NodePanel[] NodePanels
- An array with all the NodePanels
SaveThis
javax.swing.JInternalFrame SaveThis
- Self reference
Scale
double Scale
- The scale at which to draw the cell shape objects
SliderDeathTimer
javax.swing.Timer SliderDeathTimer
- Timer for killing the popup slider windows in case the user doesn't touch them
SliderWindow
javax.swing.JWindow SliderWindow
- A JWindow for holding a popup slider. It is a class variable so we can
make sure we allow only one to be open at a time.
TheMainGui
MainGui TheMainGui
- The MainGui object that this belongs to
TheModelState
ModelState TheModelState
- The ModelState that this ModelStateNodePalette is attached to
Translation
java.awt.Point Translation
- Translation for drawing of cells
ColorSwatch
javax.swing.JPanel ColorSwatch
- Widdle square JPanel for showing node color
NameField
javax.swing.JTextField NameField
- The JTextField for showing/changing the name of the Node
ShowsInViewer
javax.swing.JCheckBox ShowsInViewer
- The JCheckbox for determining if the node shows in a new CellViewer by default
TheMainGui
MainGui TheMainGui
- The MainGui object that this belongs to
TheTemplate
NodeTemplate TheTemplate
- The Node Template
ValueField
javax.swing.JTextField ValueField
- The JTextField for showing/changing the initial default value of the node
FirstParameterPanel
genegui.ParameterViewer.ParameterPanel FirstParameterPanel
FieldFont
java.awt.Font FieldFont
InitialLowerBounds
float[] InitialLowerBounds
InitialStepSizes
float[] InitialStepSizes
InitialTypes
int[] InitialTypes
InitialUpperBounds
float[] InitialUpperBounds
InitialValues
float[] InitialValues
MainMenu
javax.swing.JMenuBar MainMenu
- The MenuBar
MainPanel
javax.swing.JPanel MainPanel
- The Main panel that stores all
Parameters
ParameterSet Parameters
- The ParameterSet being viewed/edited
ParametersPanel
javax.swing.JPanel ParametersPanel
- THe panel for storing all ParameterPanels
SaveThis
ParameterViewer SaveThis
- Self Reference
SimpleDisplay
boolean SimpleDisplay
- If set to true, simple display mode is used which just shows values
TheMainGui
MainGui TheMainGui
- The MainGui object that this belongs to
params
ParameterSet params
originalValues
float[] originalValues
changed
boolean[] changed
set
boolean[] set
anyChanged
boolean anyChanged
index
int index
lMode
java.awt.Label lMode
bRevertAll
java.awt.Button bRevertAll
bRevert
java.awt.Button bRevert
fValue
java.awt.TextField fValue
bSet
java.awt.Button bSet
parList
java.awt.List parList
lVal
java.awt.Label lVal
panel1
java.awt.Panel panel1
label1
java.awt.Label label1
surfaceButton
java.awt.Button surfaceButton
startText
java.awt.TextField startText
endText
java.awt.TextField endText
stepsText
java.awt.TextField stepsText
label2
java.awt.Label label2
label3
java.awt.Label label3
model
Model model
network
Network network
scaleType
int scaleType
xStartValueText
javax.swing.JTextField xStartValueText
xEndValueText
javax.swing.JTextField xEndValueText
yStartValueText
javax.swing.JTextField yStartValueText
yEndValueText
javax.swing.JTextField yEndValueText
numPointsText
javax.swing.JTextField numPointsText
pathLengthText
javax.swing.JTextField pathLengthText
titleText
javax.swing.JTextField titleText
node1Selector
javax.swing.JComboBox node1Selector
node2Selector
javax.swing.JComboBox node2Selector
CellIndex
int CellIndex
- The Index of the cell that is presently selected
CellPaintPanelDimension
java.awt.Dimension CellPaintPanelDimension
- Preferred dimension for the CellPaintPanel
CellShapeArray
java.awt.Polygon[] CellShapeArray
- Stores the base cell shapes and locations
Listener
java.awt.event.ActionListener Listener
- ActionListener to send notification of cell selection to
Scale
double Scale
- The scale at which to draw the cell shape objects
TheModelState
ModelState TheModelState
- Pointer to models default ModelState
Translation
java.awt.Point Translation
- Translation for drawing of cells
AutoResizeJButton
javax.swing.JToggleButton AutoResizeJButton
- JToggleButton for turning auto-resizing function on and off
AutoResizeDebounceTimer
javax.swing.Timer AutoResizeDebounceTimer
- Debounce timer used for auto-resizing
CellPaintPanelDimension
java.awt.Dimension CellPaintPanelDimension
- Preferred dimension for the CellPaintPanel
CellShapeArray
java.awt.Polygon[] CellShapeArray
- Stores the base cell shapes and locations
DataArrays
java.util.ArrayList DataArrays
- An ArrayList of matricies corresponding to each time step. X coordinant
are cell # and Y coordinant node #
DataCollectionEnable
boolean DataCollectionEnable
- When true allows data points to be added
DataSets
java.util.ArrayList DataSets
- A collection of DataArrays for each model run
DataSetsDisplay
javax.swing.JLabel DataSetsDisplay
- JLabel for showing the number of data sets
DataSetHoldArray
java.util.ArrayList DataSetHoldArray
- An ArrayList of Boolean which indicates if the graph hold button is on
DataSetHoldButton
javax.swing.JToggleButton DataSetHoldButton
- Hold button for indicating that a graph should be kept displayed
despite value of DataSetIndex
DataSetIndex
int DataSetIndex
- The currently displayed data set index
DataSetIndexDisplay
javax.swing.JTextField DataSetIndexDisplay
- Field for displaying and changing the current DataSet index
GlobalGridSpacing
int GlobalGridSpacing
- Global grid spacing
GlobalLegendEnabled
boolean GlobalLegendEnabled
- Global legend setting
GlobalShowGrid
boolean GlobalShowGrid
- Global show grid setting
GlobalShowRange
boolean GlobalShowRange
- Global show range setting
GlobalXScale
float GlobalXScale
- Global graph XScale (width) setting (pixels/unit time)
GlobalYScale
float GlobalYScale
- Global graph YScale (height) setting (pixels/unit value)
GraphsPanel
javax.swing.JPanel GraphsPanel
- The JPanel for storing GraphPanels
GraphsScrollPane
javax.swing.JScrollPane GraphsScrollPane
- The ScrollPane that holds the GraphsPanel
MainMenu
javax.swing.JMenuBar MainMenu
- The Main JMenuBar
MainPanel
javax.swing.JPanel MainPanel
- The MainPanel is the content pane for the InternalFrame
NumberOfCells
int NumberOfCells
- The number of cells in the model
NumberOfNodes
int NumberOfNodes
- The number of nodes in the network
OverWriteDataButton
javax.swing.JToggleButton OverWriteDataButton
- If set successive data sets will not be accumulated, but will be over-
write the current one and the data re-displayed.
SaveThis
TimeGraph SaveThis
- Self reference
Scale
double Scale
- The scale at which to draw the cell shape objects
SimpleDisplay
boolean SimpleDisplay
- If set to true, simple display mode is used which just shows values
SourceSelector
genegui.TimeGraph.GraphSourceSelector SourceSelector
- The GraphSurceSelector JFrame shared by all GraphPanels
TheMainGui
MainGui TheMainGui
- The MainGui object that this belongs to
TheModel
Model TheModel
- A pointer to the Model being graphed
TheModelState
ModelState TheModelState
- A pointer to the ModelState used to pass information
TimeArray
java.util.ArrayList TimeArray
- An ArrayList of Floats with time values corresponsing to set of values in the DataArray
TimePointsDisplay
javax.swing.JLabel TimePointsDisplay
- Field for displaying number of datasets collected
TimeSets
java.util.ArrayList TimeSets
- A collection of TimeArrays for each model run
Translation
java.awt.Point Translation
- Translation for drawing of cells
lineNo
int lineNo
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Class main.NetworkFile extends javax.swing.text.DefaultStyledDocument implements Serializable |
styles
javax.swing.text.StyleContext styles
attributes
javax.swing.text.AttributeSet attributes
actionListener
java.awt.event.ActionListener actionListener