main
Class Experiment

java.lang.Object
  main.Experiment

public class Experiment

extends java.lang.Object

This class is supposed to be able to conduct experiments on the currently loaded net. Currently supported experiments are changing the copy number of a particular gene and doing a heat shock of a particular gene. In the near future, I'll also add in putting an alternate promoter onto a gene.

The experiments are designed to temporarily modify the currently loaded network when startExperiment is called, and then undo the modifications when stopExperiment is called.

Field Summary

SimpleStop

stopper

Constructor Summary

Experiment()

Experiment(Model model, java.lang.String filename)

Method Summary

void	endExperiment()
void	init(Model model)
protected void	loadParameter(java.lang.String info, BetterTokenizer tokenizer)
void	loadParameters(BetterTokenizer tokenizer)
void	startExperiment()

Methods inherited from class java.lang.Object

clone, equals, finalize, getClass, hashCode, notify, notifyAll, toString, wait, wait, wait

Field Detail

stopper

public SimpleStop stopper

Constructor Detail

Experiment

public Experiment()

Experiment

public Experiment(Model model,
                  java.lang.String filename)

Method Detail

init

public void init(Model model)

startExperiment

public void startExperiment()

endExperiment

public void endExperiment()

loadParameters

public void loadParameters(BetterTokenizer tokenizer)
                    throws java.lang.Exception

Throws:

java.lang.Exception

loadParameter

protected void loadParameter(java.lang.String info,
                             BetterTokenizer tokenizer)
                      throws java.lang.Exception

Throws:

java.lang.Exception