affectors
Class MxferOutAff

java.lang.Object
  affectors.Affector
      affectors.MxferOutAff

All Implemented Interfaces:

java.lang.Cloneable

public class MxferOutAff

extends Affector

This is one half of a pair of Affectors that moves things from a face of one cell to the opposing face of a neighboring cell. This makes an extremely rough approximation to diffusion across a field of cells if combined with the lateral membrane transfer Affectors. This Affector models the efflux from a face from one cell to the opposing face of its neighboring cell. Whenever you add this to a Node, you should also add the MxferIAff as well, which does the influx part. Note that the transfer rate should be the same in both the MxferOutAff and MxferInAff. Also remember that for membrane-bound Nodes, the program keeps track of a separate concentration on each face of a cell, so the formula below is for the concentration on one face.

Formula
dNODEX/dt = -Mxfer_NODEX * NODEX

Parameters

Target [NODEX]	The Node that is being diffused.
Transfer rate [Mxfer_NODEX]	The rate at which the Node moves from one face to the opposite face.

Usage
&NODEX

&MxferOutAff NODEX Mxfer_NODEX &MxferInAff NODEX Mxfer_NODEX

&endNODEX/code>

Field Summary

Fields inherited from class affectors.Affector

ADesc, affectorType, CC, CERTIFICATION, CONVERSION, copyNumber, DEGRADATION, FF, firstFreeParam, GG, GUI_CAPABLE, HH, KK, MATHTYPE, NDesc, PDesc, PRODUCTION, RETURNS_DERIV, RETURNS_PARTIALS, TERMTYPE, TT, Type, UNSPECIFIED

Constructor Summary

MxferOutAff()

Method Summary

void	fixNodes(Cell cell, java.lang.String[] node_names) Overridden because this affector uses the same node in two places.
float	getNCValue(Node which_node)
float	getValue(Node which_node)
protected void	setLabelsAndTypes()
void	setParameterNumbers(int[] param_nums)

Methods inherited from class affectors.Affector

addDefaultParam, Chi, clearStatic, copy_, copy, doesContainTarget, findOrCreateParam, findParam, getNodes, getNumNodes, getNumParameters, getOtherSide, getParameter, getParameter, getParamName, getParamPos, getParamValue, getParamValue, getParamVariationMode, init, isLinearInTarget, Phi, Psi, setContainsTarget, setDescriptions, setParameter, setParamRange, setParamRange, setParamValue, setParamValue, setSide, setSided

Methods inherited from class java.lang.Object

clone, equals, finalize, getClass, hashCode, notify, notifyAll, toString, wait, wait, wait

Constructor Detail

MxferOutAff

public MxferOutAff()

Method Detail

setLabelsAndTypes

protected void setLabelsAndTypes()

Specified by:

setLabelsAndTypes in class Affector

setParameterNumbers

public void setParameterNumbers(int[] param_nums)

Specified by:

setParameterNumbers in class Affector

fixNodes

public void fixNodes(Cell cell,
                     java.lang.String[] node_names)
              throws java.lang.Exception

Overridden because this affector uses the same node in two places.

Overrides:

fixNodes in class Affector

Throws:

java.lang.Exception

getValue

public float getValue(Node which_node)

Overrides:

getValue in class Affector

getNCValue

public float getNCValue(Node which_node)

Overrides:

getNCValue in class Affector