affectors
Class EnzymeConversionEC_Sub_Aff

java.lang.Object
  affectors.Affector
      affectors.EnzymeConversionEC_Sub_Aff

All Implemented Interfaces:

java.lang.Cloneable

public class EnzymeConversionEC_Sub_Aff

extends Affector

This is one half of an affector that converts a single node into another based on some enzymatic activity. Use this affector in the substrate. Use EnzymeConversionEC_Pro_Aff in the product. For cases in which the enzyme, product and the substrate are all on the membrane.

Formula
dSUBSTRATE/dt = -max * SUBSTRATE Phi(ENZYME,K_enzyme,nu_enzyme)

Parameters

Substrate [SUBSTRATE]	The substrate Node
Enzyme [ENZYME]	The enzyme Node
max [max]	Maximal rate of reaction.
k_enzyme [K_Enzyme]	Concentration of enzyme where activity is half maximal.
nu_enzyme [nu_Enzyme]	Apparent cooperativity of enzyme activity.

Usage
&SUBSTRATE

&EnzymeConversionEC_Sub_Aff SUBSTRATE ENZYME max K_enzyme nu_enzyme

&endNodep

See Also:

EnzymeConversionEC_Pro_Aff

Field Summary

Fields inherited from class affectors.Affector

ADesc, affectorType, CC, CERTIFICATION, CONVERSION, copyNumber, DEGRADATION, FF, firstFreeParam, GG, GUI_CAPABLE, HH, KK, MATHTYPE, NDesc, PDesc, PRODUCTION, RETURNS_DERIV, RETURNS_PARTIALS, TERMTYPE, TT, Type, UNSPECIFIED

Constructor Summary

EnzymeConversionEC_Sub_Aff()

Method Summary

float	getNCValue(Node which_node)
float	getValue(Node which_node)
protected void	setLabelsAndTypes()
void	setParameterNumbers(int[] param_nums)

Methods inherited from class affectors.Affector

addDefaultParam, Chi, clearStatic, copy_, copy, doesContainTarget, findOrCreateParam, findParam, fixNodes, getNodes, getNumNodes, getNumParameters, getOtherSide, getParameter, getParameter, getParamName, getParamPos, getParamValue, getParamValue, getParamVariationMode, init, isLinearInTarget, Phi, Psi, setContainsTarget, setDescriptions, setParameter, setParamRange, setParamRange, setParamValue, setParamValue, setSide, setSided

Methods inherited from class java.lang.Object

clone, equals, finalize, getClass, hashCode, notify, notifyAll, toString, wait, wait, wait

Constructor Detail

EnzymeConversionEC_Sub_Aff

public EnzymeConversionEC_Sub_Aff()

Method Detail

setLabelsAndTypes

protected void setLabelsAndTypes()

Specified by:

setLabelsAndTypes in class Affector

setParameterNumbers

public void setParameterNumbers(int[] param_nums)

Specified by:

setParameterNumbers in class Affector

getValue

public float getValue(Node which_node)

Overrides:

getValue in class Affector

getNCValue

public float getNCValue(Node which_node)

Overrides:

getNCValue in class Affector