affectors
Class DissociationEC_Lig_Aff

java.lang.Object
  affectors.Affector
      affectors.DissociationEC_Lig_Aff

All Implemented Interfaces:

java.lang.Cloneable

public class DissociationEC_Lig_Aff

extends Affector

One third of a triplet of affectors which mediates dissociation of receptor-ligand complexes. Use this one in the LIGAND. Use the Rec version in the RECEPTOR and the Com version in the COMPLEX. They reverse the Dimerization affectors. This can be used for both cytoplasmic and membrane-bound proteins. As with the dimerization Affectors, the ligand and receptor must be scaled by the ratio between their dimensional maximum quantities, and that scaling happens in here only for the ligand (the complex is assumed to be on the same scale as the receptor). The parameter that governs the ratio between receptor and ligand MUST BE THE SAME FOR BOTH RECEPTOR AND LIGAND.

Formula
dLigand/dt = ratio * COMPLEX/half life

Parameters

Complex [COMPLEX]	The Node represeting the dimer
Half-life [H_COMPLEX]	The half-life of the complex before it splits apart.
Ratio of ligand and receptor [R_RATIO]	The stoichiometric ratio of receptor and ligand.

Usage
&LIGAND

&DissociationEC_Lig_Aff COMPLEX H_complex R_ratio

&endLIGAND

See Also:

DissociationEC_Rec_Aff, DissociationEC_Lig_Aff

Field Summary

Fields inherited from class affectors.Affector

ADesc, affectorType, CC, CERTIFICATION, CONVERSION, copyNumber, DEGRADATION, FF, firstFreeParam, GG, GUI_CAPABLE, HH, KK, MATHTYPE, NDesc, PDesc, PRODUCTION, RETURNS_DERIV, RETURNS_PARTIALS, TERMTYPE, TT, Type, UNSPECIFIED

Constructor Summary

DissociationEC_Lig_Aff()

Method Summary

float	getValue(Node which_node)
protected void	setLabelsAndTypes()
void	setParameterNumbers(int[] param_nums)

Methods inherited from class affectors.Affector

addDefaultParam, Chi, clearStatic, copy_, copy, doesContainTarget, findOrCreateParam, findParam, fixNodes, getNCValue, getNodes, getNumNodes, getNumParameters, getOtherSide, getParameter, getParameter, getParamName, getParamPos, getParamValue, getParamValue, getParamVariationMode, init, isLinearInTarget, Phi, Psi, setContainsTarget, setDescriptions, setParameter, setParamRange, setParamRange, setParamValue, setParamValue, setSide, setSided

Methods inherited from class java.lang.Object

clone, equals, finalize, getClass, hashCode, notify, notifyAll, toString, wait, wait, wait

Constructor Detail

DissociationEC_Lig_Aff

public DissociationEC_Lig_Aff()

Method Detail

setLabelsAndTypes

protected void setLabelsAndTypes()

Specified by:

setLabelsAndTypes in class Affector

setParameterNumbers

public void setParameterNumbers(int[] param_nums)

Specified by:

setParameterNumbers in class Affector

getValue

public float getValue(Node which_node)

Overrides:

getValue in class Affector