affectors
Class Dimerize_BAff

java.lang.Object
  affectors.Affector
      affectors.Dimerize_BAff

All Implemented Interfaces:

java.lang.Cloneable

Direct Known Subclasses:

HeterodimerizeB_EC2Aff, HeterodimerizeB_ICAff

public class Dimerize_BAff

extends Affector

This is the one half of a dimerization where both undimerized Nodes reside in the same cell. The undimerized Nodes can be either cytoplasmic or membrane bound. Use this affector in the dimerized Node. Use the A version in the undimerized Nodes. The node_scale (max) for each of the dimer is the scaling factor for the singleton to which it is most dis-similar.

Formula
dDIMER/dt = r * max * SINGLE_NODE1 * SINGLE_NODE2

Parameters

Membrane Node [SINGLE_NODE1]	One of the undimerized Nodes
Cytoplasmic Node [SINGLE_NODE2]	The other of the undimerized Nodes
Dimerization rate [r_DIMER]	The rate of the dimerization reaction.
Maximum Cyto [max]	The maximum relative concentration of the undimerized Node which is most disimilar to this one.

Usage
&DIMER

&Dimerize_BAff SINGLE_NODE1 SINGLE_NODE2 r_DIMER max

&endDIMER

Field Summary

Fields inherited from class affectors.Affector

ADesc, affectorType, CC, CERTIFICATION, CONVERSION, copyNumber, DEGRADATION, FF, firstFreeParam, GG, GUI_CAPABLE, HH, KK, MATHTYPE, NDesc, PDesc, PRODUCTION, RETURNS_DERIV, RETURNS_PARTIALS, TERMTYPE, TT, Type, UNSPECIFIED

Constructor Summary

Dimerize_BAff()

Method Summary

float	getValue(Node which_node)
protected void	setLabelsAndTypes()
void	setParameterNumbers(int[] param_nums)

Methods inherited from class affectors.Affector

addDefaultParam, Chi, clearStatic, copy_, copy, doesContainTarget, findOrCreateParam, findParam, fixNodes, getNCValue, getNodes, getNumNodes, getNumParameters, getOtherSide, getParameter, getParameter, getParamName, getParamPos, getParamValue, getParamValue, getParamVariationMode, init, isLinearInTarget, Phi, Psi, setContainsTarget, setDescriptions, setParameter, setParamRange, setParamRange, setParamValue, setParamValue, setSide, setSided

Methods inherited from class java.lang.Object

clone, equals, finalize, getClass, hashCode, notify, notifyAll, toString, wait, wait, wait

Constructor Detail

Dimerize_BAff

public Dimerize_BAff()

Method Detail

setLabelsAndTypes

protected void setLabelsAndTypes()

Specified by:

setLabelsAndTypes in class Affector

setParameterNumbers

public void setParameterNumbers(int[] param_nums)

Specified by:

setParameterNumbers in class Affector

getValue

public float getValue(Node which_node)

Overrides:

getValue in class Affector