affectors
Class DimerizeMemCyto_BAff

java.lang.Object
  affectors.Affector
      affectors.DimerizeMemCyto_BAff

All Implemented Interfaces:

java.lang.Cloneable

Direct Known Subclasses:

HeterodimerizeB_ECICAff

public class DimerizeMemCyto_BAff

extends Affector

This is one third of a heterodimerization between a membrane bound and a cytoplasmic protein, leading to a cytoplasmic complex. Use this affector in the undimerized, cytoplasmic species. Use the A version in the membrane bound undimerized species and the C version in the dimer. Be careful to put the membrane and cytoplasmic species in the right order in the initializer. The node_scale for each of the singleton proteins is the scaling factor for the >other< singleton (i.e. in the membrane node, give cytoNode0 as node_scale and vice-versa).

Formula
dCYTO_NODE/dt = - r * max_MEMBRANE_NODE * MEMBRANE_NODE * CYTO_NODE

Parameters

Membrane Node [MEMBRANE_NODE]	The undimerized Node that is on the membrane
Cytoplasmic Node [CYTO_NODE]	The undimerized Node that is in the cytoplasm
Dimerization rate [r_DIMER]	The rate of the dimerization reaction.
Maximum Cyto [max_MEMBRANE]	The maximum relative concentration of the membrane-bound Node.

Usage
&CYTO_NODE

&DimerizeMemCyto_BAff MEMBRANE_NODE CYTO_NODE r_DIMER max_MEMBRANE

&endCYTO_NODE

Field Summary

Fields inherited from class affectors.Affector

ADesc, affectorType, CC, CERTIFICATION, CONVERSION, copyNumber, DEGRADATION, FF, firstFreeParam, GG, GUI_CAPABLE, HH, KK, MATHTYPE, NDesc, PDesc, PRODUCTION, RETURNS_DERIV, RETURNS_PARTIALS, TERMTYPE, TT, Type, UNSPECIFIED

Constructor Summary

DimerizeMemCyto_BAff()

Method Summary

float	getNCValue(Node which_node)
float	getValue(Node which_node)
protected void	setLabelsAndTypes()
void	setParameterNumbers(int[] param_nums)

Methods inherited from class affectors.Affector

addDefaultParam, Chi, clearStatic, copy_, copy, doesContainTarget, findOrCreateParam, findParam, fixNodes, getNodes, getNumNodes, getNumParameters, getOtherSide, getParameter, getParameter, getParamName, getParamPos, getParamValue, getParamValue, getParamVariationMode, init, isLinearInTarget, Phi, Psi, setContainsTarget, setDescriptions, setParameter, setParamRange, setParamRange, setParamValue, setParamValue, setSide, setSided

Methods inherited from class java.lang.Object

clone, equals, finalize, getClass, hashCode, notify, notifyAll, toString, wait, wait, wait

Constructor Detail

DimerizeMemCyto_BAff

public DimerizeMemCyto_BAff()

Method Detail

setLabelsAndTypes

protected void setLabelsAndTypes()

Specified by:

setLabelsAndTypes in class Affector

setParameterNumbers

public void setParameterNumbers(int[] param_nums)

Specified by:

setParameterNumbers in class Affector

getValue

public float getValue(Node which_node)

Overrides:

getValue in class Affector

getNCValue

public float getNCValue(Node which_node)

Overrides:

getNCValue in class Affector