affectors
Class DephosphorylateA_Aff

java.lang.Object
  affectors.Affector
      affectors.DephosphorylateA_Aff

All Implemented Interfaces:

java.lang.Cloneable

public class DephosphorylateA_Aff

extends Affector

This is one half of an affector that dephosphorylates a single node assuming a constant background phosphotase activity. Use this affector in the phosphorylated species. Use DephosphorylateB_Aff in the product species. For cytoplasmic proteins.

Formula
dNODEXp/dt = -DMax * NODEXp

Parameters

NODEXp [NODEXp]	The phosphorylated Node
Dmax [Dmax]	Rate of dephosphorylation.

Usage
&NODEp

&DephosphorylateA_Aff NODEp Dmax

&endNODEp

See Also:

DephosphorylateB_Aff

Field Summary

Fields inherited from class affectors.Affector

ADesc, affectorType, CC, CERTIFICATION, CONVERSION, copyNumber, DEGRADATION, FF, firstFreeParam, GG, GUI_CAPABLE, HH, KK, MATHTYPE, NDesc, PDesc, PRODUCTION, RETURNS_DERIV, RETURNS_PARTIALS, TERMTYPE, TT, Type, UNSPECIFIED

Constructor Summary

DephosphorylateA_Aff()

Method Summary

float	getNCValue(Node which_node)
float	getValue(Node which_node)
protected void	setLabelsAndTypes()
void	setParameterNumbers(int[] param_nums)

Methods inherited from class affectors.Affector

addDefaultParam, Chi, clearStatic, copy_, copy, doesContainTarget, findOrCreateParam, findParam, fixNodes, getNodes, getNumNodes, getNumParameters, getOtherSide, getParameter, getParameter, getParamName, getParamPos, getParamValue, getParamValue, getParamVariationMode, init, isLinearInTarget, Phi, Psi, setContainsTarget, setDescriptions, setParameter, setParamRange, setParamRange, setParamValue, setParamValue, setSide, setSided

Methods inherited from class java.lang.Object

clone, equals, finalize, getClass, hashCode, notify, notifyAll, toString, wait, wait, wait

Constructor Detail

DephosphorylateA_Aff

public DephosphorylateA_Aff()

Method Detail

setLabelsAndTypes

protected void setLabelsAndTypes()

Specified by:

setLabelsAndTypes in class Affector

setParameterNumbers

public void setParameterNumbers(int[] param_nums)

Specified by:

setParameterNumbers in class Affector

getValue

public float getValue(Node which_node)

Overrides:

getValue in class Affector

getNCValue

public float getNCValue(Node which_node)

Overrides:

getNCValue in class Affector