affectors
Class ConversionEAff

java.lang.Object
  affectors.Affector
      affectors.ConversionEAff

All Implemented Interfaces:

java.lang.Cloneable

public class ConversionEAff

extends Affector

Generalized rate-based conversion of one Node to another. Use this version in reactant node, use the "I" version in the product Node. These Affectors can be used for either intracellular or membrane-bound nodes as long as both participants reside in the same cell and compartment.

Formula
dREACTANT/dt = - REACTANT * r_REACTANT

Parameters

Reactant [REACTANT]	The Node which is being converted to something else.
Product [PRODUCT]	The product of the conversion.
Conversion rate [H_REACTANT_PRODUCT]	The proportion of reactant converted to product per timestep

Usage
&REACTANT

&ConversionEAff REACTANT PRODUCT r_REACTANT

&endREACTANT

@see ConversionIAff

Field Summary

Fields inherited from class affectors.Affector

ADesc, affectorType, CC, CERTIFICATION, CONVERSION, copyNumber, DEGRADATION, FF, firstFreeParam, GG, GUI_CAPABLE, HH, KK, MATHTYPE, NDesc, PDesc, PRODUCTION, RETURNS_DERIV, RETURNS_PARTIALS, TERMTYPE, TT, Type, UNSPECIFIED

Constructor Summary

ConversionEAff()

Method Summary

float	getNCValue(Node which_node)
float	getValue(Node which_node)
protected void	setLabelsAndTypes()
void	setParameterNumbers(int[] param_nums)

Methods inherited from class affectors.Affector

addDefaultParam, Chi, clearStatic, copy_, copy, doesContainTarget, findOrCreateParam, findParam, fixNodes, getNodes, getNumNodes, getNumParameters, getOtherSide, getParameter, getParameter, getParamName, getParamPos, getParamValue, getParamValue, getParamVariationMode, init, isLinearInTarget, Phi, Psi, setContainsTarget, setDescriptions, setParameter, setParamRange, setParamRange, setParamValue, setParamValue, setSide, setSided

Methods inherited from class java.lang.Object

clone, equals, finalize, getClass, hashCode, notify, notifyAll, toString, wait, wait, wait

Constructor Detail

ConversionEAff

public ConversionEAff()

Method Detail

setLabelsAndTypes

protected void setLabelsAndTypes()

Specified by:

setLabelsAndTypes in class Affector

setParameterNumbers

public void setParameterNumbers(int[] param_nums)

Specified by:

setParameterNumbers in class Affector

getValue

public float getValue(Node which_node)

Overrides:

getValue in class Affector

getNCValue

public float getNCValue(Node which_node)

Overrides:

getNCValue in class Affector