affectors
Class Cleavage2B_ICAff

java.lang.Object
  affectors.Affector
      affectors.Cleavage2B_ICAff

All Implemented Interfaces:

java.lang.Cloneable

public class Cleavage2B_ICAff

extends Affector

This is one half of an affector that cleaves a single node into two other nodes under the influence of an inhibitor. Use this affector in each of the product species. Use the A version in the uncleaved species. This one is opposite to the Cleavage_IC affectors in that the regulator inhibits cleavage rather than activates it. Otherwise they are identical.

Formula
dNODEX/dt = CMax * SUBSTRATE * ( 1 - (INHIBITOR ^ nu) / ( K ^ nu + INHIBITOR ^ nu) )

Parameters

Substrate [SUBSTRATE]	The uncleaved Node
Inhibitor [INHIBITOR]	The regulator Node which is inhibiting cleavage
Kappa [K_INHIBITOR_SUBSTRATE]	The level of the inhibitor at which it acts half-maximally.
nu [nu_INHIBITOR_SUBSTRATE]	Cooperativity of the inhibitory term.
CMax [CMax_SUBSTRATE]	Maximal rate of cleavage.

Usage
&CLEAVED_NODE

&Cleavage2B_IC SUBSTRATE INHIBITOR K_INHIBITOR_SUBSTRATE nu_INHIBITOR_SUBSTRATE C_SUBSTRATE

&endCLEAVED_NODE

Field Summary

Fields inherited from class affectors.Affector

ADesc, affectorType, CC, CERTIFICATION, CONVERSION, copyNumber, DEGRADATION, FF, firstFreeParam, GG, GUI_CAPABLE, HH, KK, MATHTYPE, NDesc, PDesc, PRODUCTION, RETURNS_DERIV, RETURNS_PARTIALS, TERMTYPE, TT, Type, UNSPECIFIED

Constructor Summary

Cleavage2B_ICAff()

Method Summary

float	getValue(Node which_node)
protected void	setLabelsAndTypes()
void	setParameterNumbers(int[] param_nums)

Methods inherited from class affectors.Affector

addDefaultParam, Chi, clearStatic, copy_, copy, doesContainTarget, findOrCreateParam, findParam, fixNodes, getNCValue, getNodes, getNumNodes, getNumParameters, getOtherSide, getParameter, getParameter, getParamName, getParamPos, getParamValue, getParamValue, getParamVariationMode, init, isLinearInTarget, Phi, Psi, setContainsTarget, setDescriptions, setParameter, setParamRange, setParamRange, setParamValue, setParamValue, setSide, setSided

Methods inherited from class java.lang.Object

clone, equals, finalize, getClass, hashCode, notify, notifyAll, toString, wait, wait, wait

Constructor Detail

Cleavage2B_ICAff

public Cleavage2B_ICAff()

Method Detail

setLabelsAndTypes

protected void setLabelsAndTypes()

Specified by:

setLabelsAndTypes in class Affector

setParameterNumbers

public void setParameterNumbers(int[] param_nums)

Specified by:

setParameterNumbers in class Affector

getValue

public float getValue(Node which_node)

Overrides:

getValue in class Affector