package affectors;

import main.Node;
import main.Globals;

/** For endocytosis to an intracellular node - non-sided; use this one in the
node representing the intracellular compartment. Note that a separate Node is used for the
intracellular and the extracellular protein pools, even though the protein 
itself may be identical in both locations.

<p> <b>Formula</b>
<br>dI_NODEX/dt = endo_NODEX * E_NODEX

<p> <b>Parameters</b>
<table width="500" border="1">
<tr><td width="150">Intracellular Node [I_NODEX]</td><td> The extracellular Node that is being endocytosed</td></tr>
<tr><td width="150">Extracellular Node [E_NODEX]</td><td> The intracellular Node representing the now intracellular protein</td></tr>
<tr><td>Endocytosis rate [endo_NODEX]</td><td> The rate at which Node is endocytosed.</td></tr>
</table>

<p> <b>Usage</b>
<code><font size = "3"><br>&I_NODEX
<blockquote>    &EndoEAff  E_NODEX  I_NODEX	endo_NODEX
</blockquote>
&endI_NODEX</code></font>

<p>@see EndoEAff
*/

public class EndoIAff extends Affector	{
	/** Rate of endocytosis. */
	int		endoParam;

	static final String		desc = "Endocytosis; version I for the intracellular Node";
	static final String	[]	nodeDescriptions = {"Intracellular form", "Extracellular form"};
	static final String	[]	paramDescriptions = {"Rate of endocytosis"};
	
	public EndoIAff()	{}

	protected void setLabelsAndTypes()	{
		setDescriptions(this.desc, nodeDescriptions, paramDescriptions);

		this.Type[GUI_CAPABLE] = 1;
		this.Type[CERTIFICATION] = Affector.RETURNS_DERIV;
		this.Type[MATHTYPE] = Affector.KK;
		this.Type[TERMTYPE] = Affector.CONVERSION;
	}
	
	public void setParameterNumbers(int [] param_nums)
	{
		endoParam = param_nums[0];
	}
	
	public float getValue(Node which_node)	{
		
		float total_ec=0;
		
		for(int i = 0; i < Globals.cellNumSides; i++)	{
			total_ec += Nodes[1].getIntegrationValue(i);
		}
		return Globals.characteristicTime * (params[endoParam]*total_ec);
	}
}