package affectors;

import main.Node;
import main.Globals;

/** One third of a triplet of affectors which mediates dissociation of receptor-ligand complexes.
 * Use this one in the COMPLEX.  Use the Rec version in the RECEPTOR and the
 * Lig version in the LIGAND.  They reverse the Dimerization affectors.  This can be used for both
 * cytoplasmic and membrane-bound proteins. As with the dimerization Affectors,
 * the ligand and receptor must be scaled by the ratio between their dimensional maximum
 * quantities, and that scaling happens in here only for the ligand (the complex is assumed
 * to be on the same scale as the receptor).
 *
 * The parameter that governs the ratio between receptor and ligand MUST BE THE SAME
 * FOR BOTH RECEPTOR AND LIGAND.
 *
 * <p> <b>Formula</b>
 * <br> dCOMPLEX/dt = -COMPLEX/half life
 *
 * <p> <b>Parameters</b>
 * <table width="500" border="1">
 * <tr><td width="150">Complex [COMPLEX]</td><td> The Node represeting the dimer</td></tr>
 * <tr><td>Half-life [H_COMPLEX]</td><td> The half-life of the complex before it splits apart.</td></tr>
 * <tr><td>Ratio of ligand and receptor [R_RATIO]</td><td> The stoichiometric ratio of receptor and ligand.</td></tr>
 * </table>
 *
 * <p> <b>Usage</b>
 * <code><font size = "3"><br>&COMPLEX
 * <blockquote>    &DissociationEC_Lig_Aff  COMPLEX  H_complex R_ratio
 * </blockquote>
 * &endCOMPLEX</code></font>
 *
 * @author Josselin Milloz
 *
 * @see DissociationEC_Rec_Aff
 * @see DissociationEC_Lig_Aff
 */
public class DissociationEC_Com_Aff extends Affector	{
	/** The half-life in minutes of the "ligand"-bound "receptor" complex; reciprocal of the dissociation rate. */
	int		halfLifeParam;
	int 	ratioParam;
	
	static final String		desc = "Dissociation of a two-component complex; version for ligand";
	static final String	[]	nodeDescriptions = {"Complex"};
	static final String	[]	paramDescriptions = {"Half-life of complex"};
	static final int	[]	whichSides = { -1 };
	
	public DissociationEC_Com_Aff()	{}

	protected void setLabelsAndTypes()	{
		setDescriptions(this.desc, nodeDescriptions, paramDescriptions);
		setSided(true, whichSides);
		setContainsTarget(true);

		this.Type[GUI_CAPABLE] = 1;
		this.Type[CERTIFICATION] = Affector.RETURNS_DERIV;
		this.Type[MATHTYPE] = Affector.KK;
		this.Type[TERMTYPE] = Affector.CONVERSION;
	}
	
	public void setParameterNumbers(int [] param_nums)
	{
		halfLifeParam = param_nums[0];
		
	}
	
	public float getValue(Node which_node)	{
		return -((Globals.characteristicTime / params[halfLifeParam]) * Nodes[0].getIntegrationValue(side));
	}
	
	public float getNCValue(Node which_node)  {
		return (-Globals.characteristicTime / params[halfLifeParam]);
	}

}